I assume that you have a direct link (e.g. using fiber) between the stack in the MDF and the one in the IDF. Again I am assuming that you are using a layer 2 connection between the two stacks, and that your external connections terminate in the MDF. That would correspond to the normal use of the terms MDF and IDF. If you are using this kind of setup, the link between the two stacks needs to carry several VLANs (all VLANs used in both locations).
In the command line you could check this with:
show ports PORTNUMBER information detail The output of this commands contains a section "VLAN cfg", which lists every VLAN configured on the port.
Since you write that Domain wireless works, but Guest does not, it seems likely that the Guest wireless VLAN is missing from the link between the two stacks.