I got a little busy and forgot to update this.
I pulled out a 2nd X460g2 put the vim card in and tried to bring up a 1gig link with no success. I tried various sfp+ and that did not make a difference.
We unplugged 2 of the 460s we were testing with and swapped their VIM cards, in the hopes that the problem with follow the card or stay with the switch. Unfortunately the problem was resolved. We moved the VIMs back to there original switches and still everything brought up the 1gig links without fail.
I have re-seated the VIMs a second time and everything still works "in the lab"
Testing will continue when I get more time.
We got side tracked testing the functionality of LRM optics. We are waiting to hear if the EDC that takes place in the PHY gets switched on and off depending on the optic detected by the switch.
Thanks for looking into this. I will definitely open a case if I am able to reproduce the failure of the 1gig link.