Antonio,
The VLANs should age out on their own if they are not being advertised elsewhere in the network. If they are being advertised, they will come back once deleted.
To prevent them from being added on the switch you can forbid those VLAN tags in MVRP (or disable MVRP):
conf mvrp tag ports registration forbidden
Once the tags are forbidden, the VLANs should be automatically removed. This assumes the VLAN has not been converted from a dynamic (i.e. SYS_VLAN_XXXX) to a user created VLAN.
The fastest way to do that for a large number of VLANs on multiple switches would be to create a quick script to execute the above command for each VLAN and port (or all ports.)