As far as I know you can use the standard (build-in) SNMP tool to configure the netflow collection only from S/K/N series.
If you configure the netflow collection by CLI then it should work = you will see flow statistics in OneView...
You can configure the netflow collection on Cisco boxes by CLI script from either Netsight Console or OneView. You can prepare your own scripts and then execute them.
I did not tested, but should work.
Z.
Regards
ZdenÄk Pala